Selected publications

Also see this page.

  • McLean AK, Luciani F, Tanaka MM (2010) Trade-offs in resource allocation in the intracellular life-cycle of hepatitis C virus. J Theor Biol. 267(4):565-572. [PubMed]
  • Luciani F, Sisson SA, Jiang H, Francis AR, Tanaka MM (2009) The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A. 106(34):14711-5. [Download]
  • Tanaka MM, Kendal JR, Laland KN (2009) From traditional medicine to witchcraft: why medical treatments are not always efficacious. PLoS One. 2009;4(4):e5192. [Download]
  • Reyes JF, Francis AR, Tanaka MM (2008) Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes. BMC Bioinformatics. Nov 27;9:496. [Download]
  • Tang C, Reyes JF, Luciani F, Francis AR, Tanaka MM (2008) spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex. Bioinformatics. Aug 18. [PubMed]   [spolTools Website]
  • Luciani F, Francis AR, Tanaka MM (2008) Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping. Infect Genet Evol. Mar;8(2):182-90. [PubMed]
  • Sisson SA, Fan Y and Tanaka MM (2007) Sequential Monte Carlo without likelihoods. Proc Natl Acad Sci U S A. 104(6):1760-5. [PubMed]
  • Tanaka MM and Francis AR (2006) Detecting emerging strains of tuberculosis by using spoligotypes. Proc Natl Acad Sci U S A. 103(41):15266-71. [Download]
  • Tanaka MM, Francis AR, Luciani F and Sisson SA (2006) Using Approximate Bayesian Computation to estimate tuberculosis transmission parameters from genotype data. Genetics. 173(3):1511-20.   [Download]
  • Tanaka MM, Phong R, Francis AR (2006) An evaluation of indices for quantifying tuberculosis transmission using genotypes of pathogen isolates. BMC Infect Dis. Jun 7;6:92.   [Download]
  • Regoes RR, Antia R, Crotty S and Tanaka MM (2005) Optimal replication of poliovirus within cells. Am Nat 165(3):364-373. [PubMed]
 
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